Han Lab Open-Source Code and Database
- Our lab’s database: https://zenodo.org/communities/hanlab-rice/
TEM and user facilities
- Rice Electron Microscopy Center: https://emc.rice.edu/
- Rice Shared Equipment Authority: https://sea.rice.edu/
TEM software
- CSI: http://spectrumimager.com/
- abTEM: https://abtem.readthedocs.io/en/latest/intro.html
- QSTEM: https://www.physics.hu-berlin.de/en/sem/software/software_qstem
- μSTEM: http://tcmp.ph.unimelb.edu.au/mustem/muSTEM.html#opennewwindow
- Diffraction pattern simulation: https://tcpekin.com/dp_sim/
- Ronchigram simulation: https://ronchigram.com/
TEM database
Cryo-EM database and tools
- EMDB: https://www.ebi.ac.uk/pdbe/emdb/
- EMPIAR: https://www.ebi.ac.uk/pdbe/emdb/empiar/
- Relion: https://www3.mrc-lmb.cam.ac.uk/relion/index.php?title=Main_Page
- cryoSPARC: https://cryosparc.com/
- cisTEM: https://cistem.org/
- EMAN/EMAN2: https://blake.bcm.edu/emanwiki/EMAN https://blake.bcm.edu/emanwiki/EMAN2
- MotionCor2: https://emcore.ucsf.edu/ucsf-motioncor2
- CTFFIND4: https://grigoriefflab.umassmed.edu/ctffind4
- Gctf/Gautomatch: https://www.mrc-lmb.cam.ac.uk/kzhang/
Released dataset
- 52 kDa streptavidin (SA) on graphene grid. EMD-20907 EMPIAR-10335